By Nicole White, Data Scientist | December 17, 2014

Written by Nicole White, originally posted on her blog.

What’s New in RNeo4j?

RNeo4j is Neo4j’s R driver – it allows you to quickly and easily interact with a Neo4j database from your R environment. Some recent updates to RNeo4j include:

My contributions
- Functionality for retrieiving and handling paths
- Additional sample datasets
Community contributions
- Open the Neo4j browser in RStudio
- Set custom HTTP options

Paths

Several functions have been added for retrieving and manipulating paths. These include:

getPaths
nodes
rels
shortestPath
allShortestPaths

To demonstrate these functions, I’ll first add data to the graph with createNodeand createRel:

library(RNeo4j)
neo4j = startGraph("http://localhost:7474/db/data/")

alice = createNode(neo4j, "User", name = "Alice")
bob = createNode(neo4j, "User", name = "Bob")
charles = createNode(neo4j, "User", name = "Charles")
david = createNode(neo4j, "User", name = "David")
elaine = createNode(neo4j, "User", name = "Elaine")

r1 = createRel(alice, "LIKES", bob, weight = 1)
r2 = createRel(bob, "LIKES", charles, weight = 2)
r3 = createRel(bob, "LIKES", david, weight = 3)
r4 = createRel(charles, "LIKES", david, weight = 4)
r5 = createRel(alice, "LIKES", elaine, weight = 5)
r6 = createRel(elaine, "LIKES", david, weight = 6)

getPaths

getPaths allows you to retrieve a list of path objects with a Cypher query. The following query will find all paths (to a maximum depth of four) that traverse the relationship type LIKES between Alice and David:

query = "
MATCH p = (u1:User)-[:LIKES*..4]->(u2:User)
WHERE u1.name = 'Alice' AND u2.name = 'David'
RETURN p
"

p = getPaths(neo4j, query)

Again, this returns a list of path objects. You can find how many paths were found by returning the length of this list:


length(p)

## [1] 3

nodes

nodes extracts the node objects from a path object. Because paths is a list of path objects, we need to lapply through it and apply the function nodes to each path in the list:

n = lapply(p, nodes)

n is a list of lists. If we wanted to view the names of all the people on each path, for example, we can again use the apply family of functions. As we saw earlier when using length, three paths were found. The following displays the names of the nodes on each of the paths:

lapply(n, function(x) sapply(x, `[[`, 'name'))

## [[1]]
## [1] "Alice"   "Bob"     "Charles" "David"  
## 
## [[2]]
## [1] "Alice" "Bob"   "David"
## 
## [[3]]
## [1] "Alice"  "Elaine" "David"

rels

rels, similarly to nodes, extracts the relationship objects from a path object. Recall that each relationship has a weight property.

r = lapply(p, rels)
lapply(r, function(x) sapply(x, `[[`, 'weight'))

## [[1]]
## [1] 1 2 4
## 
## [[2]]
## [1] 1 3
## 
## [[3]]
## [1] 5 6

shortestPath, allShortestPaths

shortestPath and allShortestPaths find a single shortest path or all shortest paths between two node objects, respectively.

p = shortestPath(alice, "LIKES", david, max_depth = 4)
sapply(nodes(p), `[[`, 'name')

## [1] "Alice" "Bob"   "David"

p = allShortestPaths(alice, "LIKES", david, max_depth = 4)
n = lapply(p, nodes)
lapply(n, function(x) sapply(x, `[[`, 'name'))

## [[1]]
## [1] "Alice" "Bob"   "David"
## 
## [[2]]
## [1] "Alice"  "Elaine" "David"

allShortestPaths found both of the these paths because they tie for the shortest path (they’re both length-two paths). shortestPath, on the other hand, returned just one of these paths arbitrarily.

Additional Sample Datasets

If you want to quickly begin exploring the capabilities of RNeo4j but don’t have any datasets, you can import one of the sample datasets shipped with this package withimportSample. This will import the selected dataset into Neo4j. There are four datasets, ranging from travel to entertainment to social. These include:

Twitter
Dallas/Forth Worth Airport
Caltrain
Movies

Each dataset can be imported with its respective keyword. To import the Twitter dataset, for example, use the keyword "tweets":

importSample(neo4j, "tweets")

When executing importSample, you will have to answer a prompt confirming it is okay to wipe your Neo4j database and import the selected dataset. You can get a decent overview of what’s been imported into Neo4j with summary, which will show you what is related and how:

summary(neo4j)

##      This       To   That
## 1   Tweet    USING Source
## 2   Tweet MENTIONS   User
## 3   Tweet RETWEETS  Tweet
## 4    User    POSTS  Tweet
## 5   Tweet CONTAINS   Link
## 6   Tweet REPLY_TO  Tweet
## 7 Hashtag     TAGS  Tweet

We can look at the top-mentioned users with cypher, which returns tabular Cypher results as a data.frame:

query = "
MATCH (tweet:Tweet)-[:MENTIONS]->(user:User)
RETURN user.screen_name AS user, COUNT(tweet) AS mentions
ORDER BY mentions DESC
LIMIT 5
"

cypher(neo4j, query)

##              user mentions
## 1           neo4j       28
## 2        ikwattro        8
## 3 _nicolemargaret        7
## 4     rvanbruggen        7
## 5      Linkurious        6

Open the Neo4j Browser in RStudio

A pull request by Kenneth Darrell makes it so you can open the Neo4j browser inRStudio’s viewer pane with browse. I use this functionality all the time now, as I usually want to do a quick check to see if my data was imported correctly. Recall that the Twitter dataset is currently in Neo4j, as we imported it earlier. Often, I’ll open the Neo4j browser and run the query…

MATCH n RETURN n LIMIT 50

…so I can click around and make sure everything looks as expected:

browse(neo4j)

Set Custom HTTP Options

A pull request by Mark Needham makes it so you can set custom HTTP options. In particular, this is useful for setting the HTTP timeout. These options are set instartGraph:

neo4j = startGraph("http://localhost:7474/db/data/", 
                   opts = list(timeout=2))

Now, any terrible Cypher queries you write will time out after two seconds and you will regain access to your R console without the need to terminate R:

query = "
MATCH p = ()-[*..5]-() RETURN LENGTH(p)
"
test = try(cypher(neo4j, query))
cat(test[1])

## Error in function (type, msg, asError = TRUE)  : 
##   Operation timed out after 2000 milliseconds with 327680 bytes received

Note, however, that the query continues to run server-side. See Mark’s blog poston setting server timeouts. Feel free to make your own contributions by submitting pull requests to the RNeo4j GitHub repository. Want to learn more about graph databases? Click below to get your free copy of O’Reilly’s Graph Databases ebook and discover how to use graph technologies for your application today. Download My Ebook

Keywords: Nicole White • RNeo4j • update

About the Author

Nicole White, Data Scientist

Nicole White grew up in Kansas City, Missouri and then spent four years at LSU in Baton Rouge, Louisiana where she got a degree in economics with a minor in mathematics. She then went to the University of Texas at Austin where she got her masters degree in analytics, and it was during this time that she found Neo4j and began playing around with it. When she’s not graphing all the things, she spends her time playing card games and board games.

Neo4j Community Disclaimer

1 Comment

Susan says:

January 22, 2016 at 10:54 pm

Would it be possible to publish the create_db function you used to set up the twitter sample?
I’m having a hard time getting the hashtags to work.

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