Structures of the Ribosome and Other Large Molecules On the Graph

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Session Track:

Session Time: 11:30 pm - 11:45 pm November 7

Session description

Perhaps at this point in time that graph-like relationships are abundant in biology and our database application, ribosome.xyz, is just a point in case. We use Neo4j to capture semantic relationships between the structural components of the ribosome and other large molecules. The polymers that make up these molecules possess a great deal of structural and functional heterogeneity with an abundance of natural relationships that lend themselves well to the graph format.

Speaker

Artem Kushner

KDD Group | UBC

Howdy. I’m a student in the math department at UBC, Vancouver in Khanh Dao Duc’s lab. I’m interested in type theory and compilers, their applications in ML and, separately, ML applications to cryoEM/ET and downstream structural biology. I built and maintain ribosome.xyz.